Thesis: Exploring Different Software Workflows to Optimise Biomarker Inference for Boolean Model Calibration and Drug Synergy Predictions (2023)

The main objective of my master project is to explore a series of bioinformatic tools and approaches (such as the decoupleR tool set) to infer biomarkers from a variety of datasets. More specifically, I will be testing and comparing extraction results from different tools against expectations, in order to find the best approach for optimal biomarker inference.